High-Protein, Cottage Cheese Pumpkin Muffins Recipe
If you are looking for a delightful treat that brings together rich autumn flavors and muscle-friendly nutrition, these High-Protein, Cottage Cheese Pumpkin Muffins are an absolute game-changer. Imagine biting into a moist, spiced muffin packed with creamy cottage cheese and wholesome pumpkin, providing a satisfying boost of protein along with comforting fall spices. Whether you need a morning pick-me-up or a post-workout snack with a twist, this recipe delivers both indulgence and nourishment in every single bite.

Ingredients You’ll Need
These ingredients are wonderfully simple yet vital for creating the signature texture and flavor of High-Protein, Cottage Cheese Pumpkin Muffins. Each component plays a special role, from the creamy cottage cheese adding moisture and protein to the warm spices that create that classic pumpkin aroma.
- 1 cup pumpkin puree: The star ingredient that brings natural sweetness, color, and that unmistakable autumn vibe.
- 1/2 cup low-fat cottage cheese: Adds a creamy texture and a powerful protein punch to keep you energized.
- 2 large eggs: Essential for binding the ingredients together and providing structure.
- 3/4 cup oat flour: Provides a hearty base with a subtle nutty flavor and is gluten-free if made from certified oats.
- 2 tablespoons maple syrup: A natural sweetener that perfectly complements the spices without overpowering.
- 1 teaspoon baking powder: Helps the muffins rise beautifully, creating a tender crumb.
- 1 teaspoon ground cinnamon: Delivers warmth and a classic fall flavor.
- 1/4 teaspoon ground nutmeg: Adds a touch of aromatic spice that enhances the pumpkin’s flavor.
- 1/8 teaspoon ground cloves: Brings a hint of depth and complexity to the spice blend.
- 1/4 cup pumpkin seeds (plus extra for topping): Offers a satisfying crunch and a boost of healthy fats.
- Pinch of salt: Balances the sweetness and enhances all the other flavors.
How to Make High-Protein, Cottage Cheese Pumpkin Muffins
Step 1: Prepare Your Oven and Muffin Tin
First things first, set your oven to a cozy 350°F (175°C). Line your muffin tin with paper liners to make clean-up easy and help those muffins come out perfectly shaped. This simple prep sets you up for muffin-making success from the start.
Step 2: Mix the Wet Ingredients
Drain the cottage cheese briefly to avoid excess moisture, then whisk together the pumpkin puree, eggs, cottage cheese, and maple syrup until you have a smooth, velvety batter. This combination creates the creamy, protein-rich foundation for your muffins.
Step 3: Combine Dry Ingredients
In a separate bowl, whisk your oat flour with baking powder, cinnamon, nutmeg, cloves, and a pinch of salt. This aromatic spice blend is what gives these muffins their unforgettable warmth and depth, perfectly complementing the pumpkin.
Step 4: Bring It All Together
Gently fold the dry ingredients into the wet mixture to avoid overmixing, which can toughen muffins. Stir in the pumpkin seeds to add a lively texture and nutty flavor that surprises with every bite.
Step 5: Fill and Top Your Muffin Tin
Divide the batter evenly among your muffin liners. Sprinkle some extra pumpkin seeds on top to create an inviting crunch and a beautiful finish. These little seeds add visual appeal as well as a satisfying bite.
Step 6: Bake to Perfection
Pop the muffin tin into the oven and bake for 20-25 minutes, or until a toothpick inserted in the center comes out clean. This step is where your kitchen starts smelling like autumn heaven!
Step 7: Cool and Enjoy
Let your High-Protein, Cottage Cheese Pumpkin Muffins cool on a wire rack before diving in. Cooling helps set the texture so each muffin holds its shape and the flavors settle beautifully.
How to Serve High-Protein, Cottage Cheese Pumpkin Muffins

Garnishes
For a lovely finishing touch, consider sprinkling a little cinnamon sugar on top right after baking or a tiny drizzle of pure maple syrup. A dollop of Greek yogurt or a smear of nut butter also pairs wonderfully if you want to add creaminess and extra nutrients.
Side Dishes
These muffins shine on their own but pair exquisitely with a warm cup of chai tea or black coffee. For a more substantial brunch, serve alongside fresh fruit or a green salad for contrast and balance.
Creative Ways to Present
If you’re bringing these muffins to a gathering, arrange them on a rustic wooden board with decorative pumpkin garnish and autumn leaves for a festive touch. You can also slice muffins in half and turn them into a mini sandwich with cream cheese and sliced apple for a playful, protein-packed snack.
Make Ahead and Storage
Storing Leftovers
Once completely cooled, store your muffins in an airtight container at room temperature for up to 3 days. For longer freshness, keep them refrigerated where they will stay moist and flavorful for about a week.
Freezing
These High-Protein, Cottage Cheese Pumpkin Muffins freeze beautifully! Wrap each muffin individually in plastic wrap and place them in a freezer-safe bag. They’ll keep well for up to 3 months, making them a fantastic meal prep option.
Reheating
To warm up frozen or refrigerated muffins, pop them in the microwave for 20-30 seconds or warm gently in a 325°F oven for about 10 minutes. This will revive that just-baked softness and enhance the comforting pumpkin aroma.
FAQs
Can I use regular flour instead of oat flour?
Yes, you can substitute regular all-purpose flour if you don’t have oat flour on hand. However, oat flour adds a lovely nutty flavor and makes the muffins more wholesome. If using all-purpose flour, consider slightly reducing the amount or adding a little extra moisture.
Is it possible to make these muffins dairy-free?
Dairy-free versions can be tricky because cottage cheese provides the protein and moisture. You might try using a vegan cream cheese or silken tofu, but expect a change in texture and flavor. Experiment and let your taste buds guide you!
How high is the protein content in these muffins?
Thanks to the cottage cheese and eggs, each muffin packs a solid protein boost, perfect for a snack that keeps you full longer. You’re getting quality protein alongside fiber from the oat flour and healthy fats from pumpkin seeds.
Can I sweeten the muffins with honey instead of maple syrup?
Absolutely! Honey is a great alternative sweetener. Just use it in the same quantity and it will provide a slightly different, yet still delicious, depth of sweetness.
Do these muffins keep well for meal prepping?
Definitely! Thanks to their hearty ingredients and protein content, these muffins hold up beautifully over several days and are perfect for making ahead. Just follow storage tips to keep them fresh and tasty.
Final Thoughts
These High-Protein, Cottage Cheese Pumpkin Muffins are the perfect way to celebrate fall flavors without compromising on nutrition. They bring a satisfying mix of moist texture, warm spices, and protein-packed goodness that will quickly become a favorite go-to snack or breakfast. I encourage you to dive in and bake a batch – your taste buds and your body will thank you!
PrintHigh-Protein, Cottage Cheese Pumpkin Muffins Recipe
These High-Protein Cottage Cheese Pumpkin Muffins are a nutritious and delicious treat, combining the natural sweetness of pumpkin and maple syrup with the creamy texture of low-fat cottage cheese. Perfect for breakfast or a healthy snack, these muffins are packed with protein and warming autumn spices, making them both satisfying and flavorful.
- Prep Time: 10 minutes
- Cook Time: 22 minutes
- Total Time: 32 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack, Baking
- Method: Baking
- Cuisine: American
- Diet: Low Fat
Ingredients
Wet Ingredients
- 1 cup pumpkin puree
- 1/2 cup low-fat cottage cheese, drained
- 2 large eggs
- 2 tablespoons maple syrup
Dry Ingredients
- 3/4 cup oat flour
- 1 teaspoon baking powder
- 1 teaspoon ground cinnamon
- 1/4 teaspoon ground nutmeg
- 1/8 teaspoon ground cloves
- Pinch of salt
Add-ins and Toppings
- 1/4 cup pumpkin seeds (plus extra for topping)
Instructions
- Preheat Oven: Preheat your oven to 350°F (175°C) and prepare a muffin tin by lining it with paper liners to prevent sticking.
- Mix Wet Ingredients: Briefly drain the cottage cheese to remove excess moisture. In a mixing bowl, combine the pumpkin puree, eggs, cottage cheese, and maple syrup. Blend these ingredients together until the mixture is smooth and uniform.
- Combine Dry Ingredients: In a separate bowl, whisk together the oat flour, baking powder, ground cinnamon, nutmeg, cloves, and a pinch of salt to evenly distribute the spices and leavening agent.
- Incorporate Dry Ingredients: Gently fold the dry ingredient mixture into the wet ingredients to avoid overmixing, which could make the muffins tough. Stir in the 1/4 cup of pumpkin seeds to add texture and crunch.
- Fill Muffin Tin: Evenly distribute the batter into the prepared muffin tin, filling each cup about three-quarters full. Sprinkle extra pumpkin seeds on top of each muffin for garnish and added crunch.
- Bake: Place the muffin tin in the preheated oven and bake for 20-25 minutes. To check doneness, insert a toothpick into the center of a muffin; it should come out clean when the muffins are fully baked.
- Cool and Serve: Remove the muffins from the oven and allow them to cool on a rack. This helps them set properly and enhances their texture before enjoying.
Notes
- Ensure to drain the cottage cheese well to avoid excess moisture in the batter.
- Oat flour can be substituted with gluten-free oat flour to maintain a gluten-free version.
- The muffins can be stored in an airtight container at room temperature for up to 3 days or refrigerated for up to a week.
- For added sweetness, drizzle a little more maple syrup on top before serving if desired.
- These muffins freeze well; store in a freezer bag and reheat in the microwave when needed.
Nutrition
- Serving Size: 1 muffin
- Calories: 130
- Sugar: 5g
- Sodium: 120mg
- Fat: 5g
- Saturated Fat: 1g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 15g
- Fiber: 3g
- Protein: 8g
- Cholesterol: 40mg
Keywords: high protein muffins, cottage cheese muffins, pumpkin muffins, healthy pumpkin recipes, protein breakfast, autumn baking